Books by Jules J. Berman, covers

Publications, Jules J. Berman, Ph.D., M.D.

See also Miscellaneous works page

Journal Articles
  1. Berman JJ. Post-Informatics pathology. J Pathol Inform 2011;2:18
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  2. Berman JJ. Informatics research using publicly available pathology data. J Pathol Inform 2011;2:5
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  3. Kang HP, Borromeo CD, Berman JJ, Becich MJ. The tissue microarray OWL schema: an open-source tool for sharing tissue microarray data. J Pathol Inform 1:9, 2010.
    Full text document

  4. Drake TA, Braun J, Marchevsky A, MD; Kohane IS, Fletcher C, Chueh H, Beckwith B, Berkowicz D, Kuo F, Zeng QT, Balis U, Holzbach A, McMurry A; Gee CE, McDonald C, Davis M, Blevins L, Becich M, Crowley R, Taube SE, Berman JJ. A system for sharing routine surgical pathology specimens across institutions: the Shared Pathology Informatics Network (SPIN). Hum Pathol 38:1212-25, 2007.
    PubMed Abstract

  5. Ashokkumar A Patel, Dilipkumar Gupta, David Seligson, Eyas M Hattab, Ulysses J Balis, Thomas M Ulbright, Isaac S Kohane, Jules J Berman, John R Gilbertson, Sarah Dry, Osvaldo Schirripa, Hong Yu, Michael J Becich, Anil V Parwani and Shared Pathology Informatics Network (SPIN). Availability and quality of paraffin blocks identified in pathology archives: A multi-institutional study by the Shared Pathology Informatics Network (SPIN).
    Accepted Feb. 28, 2007
    MS: 1607386739368951
    BMC Cancer 2007, 7:37
    PDF document

  6. Berman JJ, Albores-Saavedra J, Bostwick D, Delellis R, Eble J, Hamilton SR, Hruban RH, Mutter GL, Page D, Rohan T, Travis W, Henson DE. Precancer: A conceptual working definition Results of a Consensus Conference. Cancer Detect Prev. 30(5):387-394, 2006.
    Manuscript

  7. Kajdacsy-Balla A, Geynisman JM, Macias V, Setty S, Nanaji NM, Berman JJ , Dobbin K, Melamed J, Kong X, Bosland M, Orenstein J, Bayerl J, Becich MJ, Dhir R, Datta MW.
    Practical aspects of planning, building, and interpreting tissue microarrays: The Cooperative Prostate Cancer Tissue Resource experience.
    J Mol Histol. 2007 Feb 21
    PubMed Abstract

  8. McDonald CJ, Dexter P, Schadow G, Chueh H, Abernathy G, Hook J, Blevins L, Overhage M, Berman J. SPIN Query Tools for De-identified Research on a Humongous Database. AMIA Annu Symp Proc. 2005;:515-519.
    PubMed Citation
    PubMed Central Full Text

  9. Patel AA, Gilbertson JR, Parwani AV, Dhir R, Datta MW, Gupta R, Berman JJ, Melamed J, Kajdacsy-Balla A, Orenstein J, Becich MJ. An informatics model for tissue banks - Lessons learned from the Cooperative Prostate Cancer Tissue Resource BMC Cancer 2006, 6:120
    doi:10.1186/1471-2407-6-120
    Published 5 May 2006
    PMID: 16677389
    Article BMC

  10. Deutsch EW, Ball CA, Berman JJ, Bova GS, Brazma A, Bumgarner RE, Campbell D, Causton HC Christiansen J, Davidson D, Eichner LJ, Goo YA, Grimmond S, Henrich T, Johnson MH, Korb M, Mills JC, Oudes A, Parkinson HE, Pascal LE, Quackenbush J, Ramialison M, Ringwald M, Sansone SA, Sherlock G, Stoeckert CJ, Swedlow J, Taylor RC, Walashek L, Zhou Y, Liu AY, True LD. Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments (MISFISHIE). Nature Biotechnol 26:305-312, 2008.
    PDF document

  11. Friedman BA, Berman JJ, Balis UJ. Reinventing Pathology: Clinical Pathology Informatics in the Era of the Electronic Medical Record. LabMedicine, 37(5):313-314, May 2006

  12. Friedman B, Berman JJ. Reinventing pathology: the hematopathologist as a model for the pathologist of the future. LabMedicine 37(3):182-183, March, 2006.

  13. Friedman B, Berman JJ. Reinventing pathology: enhancing the clinical laboratory and pathology report. LabMedicine 37(2):121-122, February 2006.

  14. Friedman B, Berman JJ. Reinventing pathology: the autopsy. LabMedicine 37:54-55, January 2006.

  15. Berman JJ. Automatic extraction of candidate nomenclature terms using the doublet method.
    BMC Medical Informatics and Decision Making 2005, 5:35
    published Oct. 18, 2005
    doi:10.1186/1472-6947-5-35
    BiomedCentral download

  16. Berman JJ. Modern classification of neoplasms: reconciling differences between morphologic and molecular approaches. BMC Cancer 2005, 5:100
    Accepted for Publication August 10, 2005
    doi:10.1186/1471-2407-5-100
    PubMed ID: 16092965
    Download manuscript and supplemental files
    PubMed Abstract

  17. Ashokkumar A Patel AA, Kajdacsy-Balla A, Berman JJ, Bosland M, Datta MW, Dhir R, Gilbertson J, Melamed J, Orenstein J, Tai KF, Becich MJ. The development of common data elements for a multi-institute prostate cancer tissue bank: The Cooperative Prostate Cancer Tissue Resource (CPCTR) experience. BMC Cancer 2005, 5:108
    doi:10.1186/1471-2407-5-108
    Published Aug. 21, 2005
    BiomedCentral download

  18. Berman JJ. Nomenclature-based data retrieval without prior annotation: facilitating biomedical data integration with fast doublet matching. In Silico Biology 5, 0029, 2005.
    Online Journal
    pdf document

  19. Berman JJ and Bhatia K. Biomedical Data Integration: Using XML to Link Clinical and Research Datasets. Expert Reviews in Molecular Diagnostics. Expert Rev Mol Diagn. 2005 May;5(3):329-336. PMID: 15934811
    Manuscript

  20. Berman JJ. Tumor taxonomy for the developmental lineage classification of neoplasms. BMC Cancer. 2004 Nov 30;4(1):88
    doi:10.1186/1471-2407-4-88
    PubMed Abstract
    BMC Cancer download

  21. Berman JJ. Pathology Data Integration with eXtensible Markup Language. Human Pathology 2005, 36(2):139-145.
    Document

  22. Datta MW, Dhir R, Dobbin K, Melamed J, Becich MJ, Orenstein JM, Kadjacsy-Balla A, Bosland MC, Berman JJ. Prostate cancers in patients with low initial screening PSA values: Results from the Cooperative Prostate Cancer Tissue Resource. Journal of Urology, 173:1546-1551, 2005.
    PMID: 15821483
    PubMed Abstract

  23. Berman JJ. Borderline ovarian tumor workshop, Bethesda, Maryland, August 27-28, 2003. Human Pathology, 35:907-909, 2004.
    Full-text document
    Workshop table of contents
    Web atlas

  24. Seidman JD, Soslow RA, Vang R, Berman JJ , Stoler MH, Sherman ME, Oliva E, Kajdacsy-Balla A, Berman DM, Copeland LJ. Borderline ovarian tumors: Diverse contemporary viewpoints on terminology and diagnostic criteria with illustrative images Human Pathology, 35:918-933, 2004.
    PubMed Abstract
    Image Website
    Alternate Image Website

  25. Sherman ME, Berman J , Birrer MJ, Cho KR, Ellenson LH, Gorstein F, Seidman JD. Current challenges and opportunities for research on borderline ovarian tumors. Human Pathology 35:961-970, 2004.
    PubMed Abstract

  26. Berman JJ. Doublet method for very fast autocoding. BMC Medical Informatics and Decision Making 2004, 4:16
    doi:10.1186/1472-6947-4-16
    Download manuscript and supplemental files
    PubMed Abstract

  27. Mitchell KJ, Becich MJ, Berman JJ, Chapman WW, Gilbertson J, Gupta D, Harrison J, Legowski E, Crowley RS. Implementation and evaluation of a negation tagger in a pipeline-based system for information extraction from pathology reports. MEDINFO, 2004:663-7, 2004.
    PubMed Abstract

  28. Melamed J, Datta MW, Becich MJ, Orenstein JM, Dhir R, Silver S, Fidelia-Lambert M, Kadjacsy-Balla A, Macias V, Patel A, Walden PD, Bosland MC, Berman JJ, and the Cooperative Prostate Cancer Tissue Resource. The Cooperative Prostate Cancer Tissue Resource (CPCTR): A Specimen and Data Resource for Cancer Researchers. Clin Cancer Res. Jul 15;10(14):4614-4621, 2004.
    PMID: 15269132
    Full-text document from publisher

  29. Berman JJ, Datta MW, Kajdacsy-Balla A, Melamed J, Orenstein J, Dobbin K, Patel A, Dhir R, Becich MJ. Tissue microarray data exchange specification: implementation by the Cooperative Prostate Cancer Tissue Resource. BMC Bioinformatics, 5:19 (27 February, 2004)
    PubMed Abstract
    Article

  30. Berman JJ. Tumor classification: molecular analysis meets Aristotle BMC Cancer, BMC Cancer 2004, 4:10
    Received 15 November 2003
    Published 17 March 2004
    doi:10.1186/1471-2407-4-10
    PubMed ID:15113444
    PubMed Central link: http://www.pubmedcentral.gov/articlerender.fcgi?tool=pubmed&pubmedid=15113444
    Manuscript at BiomedCentral
    This article is among the all-time most-viewed articles in BMC Medical Informatics and Decision Making. On May 5, 2012, it had been downloaded over 23,000 times from the BMC site, making it the 4th most-viewed article for BMC Cancer.
    Statistics Page

  31. Booker D, Berman JJ. Dangerous abbreviations. Hum Pathol. 35:529-531, 2004
    doi:10.1016/j.humpath.2004.01.007

  32. Berman JJ. Racing to share pathology data. Am J Clin Pathol. 2004 Feb;121(2):169-171.
    PMID: 14983928, DOI: 10.1309/F7B40JMQ4F8VPDG6.
    Document

  33. Berman JJ. Resources for comparing the speed and performance of medical autocoders.
    BMC Medical Informatics and Decision Making 2004, 4:8, 2004
    doi:10.1186/1472-6947-4-8
    Abstract
    Full text

  34. Berman JJ, Henson DE. Human Pathology, 35:137-138, January 2004, DOI: 10.1016/j.humpath.2003.10.005
    Text

  35. Berman JJ. Zero-Check: A Zero-Knowledge Protocol for Reconciling Patient Identities Across Institutions. Archives of Pathology and Laboratory Medicine 128:344-346, 2004.
    Link to HTML Document
    Link to PDF document
    PMID: 14987146

  36. Berman JJ. Pathology Abbreviated: A Long Review of Short Terms. Archives of Pathology and Laboratory Medicine, 128:347-352, 2004.
    Document
    PMID: 14987146

  37. Berman JJ, Edgerton ME, Friedman B. The Tissue Microarray Data Exchange Specification: A Community-based, Open Source Tool for Sharing Tissue Microarray Data. BMC Medical Informatics and Decision Making. 2003, 3:5 (23 May 2003)
    Full text from BiomedCentral
    Full text from PubmedCentral
    Supplementary files:
    Tissue Microarray Common Data Elements with ISO-11179 annotation.

  38. Berman JJ. A Tool for Sharing Annotated Research Data: the "Category 0" UMLS (Unified Medical Language System) Vocabularies. 3:6, 2003.
    PubMed Entry
    Full text from BiomedCentral
    Full text from PubmedCentral

  39. Berman JJ, Henson DE. Classifying the Precancers: A Meta Data Approach.
    BMC Medical Informatics and Decision Making 3:8, 2003
    Full text from BiomedCentral
    Full text from PubmedCentral
    Workshop Report, Feb 1-2, 2001 meeting
    PubMed Entry
    Eurekalert Press Release
    BMC Press Release
    Science Blog News Report
    This article is among the all-time most-viewed article in BMC Medical Informatics and Decision Making.
    Statistics Page

  40. Berman JJ, Henson DE. The Precancers: Waiting for a classification. Human Pathology 34:833-834, September, 2003.
    Text

  41. Berman JJ. Concept-Match Medical Data Scrubbing: How pathology datasets can be used in research. Arch Pathol Lab Med Arch Pathol Lab Med, 127:680-686, 2003.
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  42. Berman JJ. Threshold protocol for the exchange of confidential medical data. BMC Medical Research Methodology, 2:12, 2002.
    Full text from BiomedCentral
    Full text from PubmedCentral

  43. Kogan SC, Ward JM, Anver M, Berman JJ, Brayton C, Cardiff RD, Carter J, De Coronado S, Downing J, Fredrickson T, Haines DC, Harris A, Harris NL, Hiai H, Jaffe ES, MacLennan ICM, Mufson RA, Pandolfi PP, Pattengale P, Perkins AS, Simpson RM, Tuttle M, Wong J, Morse HC. Bethesda Proposals for the Classification of Murine Non-lymphoid Hematopoietic Neoplasms. Blood 100(1):238-245, July, 2002
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  44. Berman JJ. Confidentiality for Medical Data Miners. Artificial Intelligence in Medicine. 26(1-2):25-36, 2002.
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  45. Berman JJ and O'Leary TJ. Gastrointestinal stromal tumors: answers and questions. Human Pathology, 33(5):456-458, May, 2002.
    PubMed Entry

  46. Fletcher CD, Berman JJ , Corless C, Gorstein F, Lasota J, Longley BJ, Miettinen M, O'Leary TJ, Remotti H, Rubin BP, Shmookler B, Sobin LH, Weiss SW. Diagnosis of gastrointestinal stromal tumors: a consensus approach. Int J Surg Pathol Apr;10(2):81-89, 2002.
    PubMed Entry

  47. Fletcher CD, Berman JJ , Corless C, Gorstein F, Lasota J, Longley BJ, Miettinen M, O'Leary TJ, Remotti H, Rubin BP, Shmookler B, Sobin LH, Weiss SW. Diagnosis of gastrointestinal stromal tumors: a consensus approach. Human Pathology 33(5):459-65, May, 2002
    Full Text PDF document

    This article is the all-time most cited article for the journal Human Pathology, with 1678 citations recorded by Google Scholar on March 11, 2010.

    Note: The editors of Human Pathology and the International Journal of Surgical Pathology considered the consensus document to be of sufficiently high importance to all pathologists to deserve publication in an American-based and a European-based pathology journal. This article was (on November 16, 2008) the third most cited journal article to be published in the International Journal of Surgical Pathology
    Citation Report

  48. Berman JJ and O'Leary TJ. Gastrointestinal stromal tumor workshop. Human Pathology 32:578-582, 2001.
    Full Text of Article

  49. Moore GW, Brenner DS, Berman JJ. Indexing large archives of pathology images using the Unified Medical Language System. Pathology Education, 25:56-62, 2000.
    PDF full text

  50. Hutchins GM, Berman JJ, Moore GW, Hanzlick R and the Autopsy Committee of the College of American Pathologists. Practice guidelines for autopsy pathology. Archives of Pathology and Laboratory Medicine 123:1085-1092, 1999
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  51. Berman JJ, Moore GW, Hutchins GM. Senate Bill S. 422, Genetic Confidentiality and Non-Discrimination Act of 1997. Diagnostic Molecular Pathology 7(4)(August):192-196, 1998
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  52. Berman JJ, Moore GW, Hutchins GM. Internet Autopsy Database. Human Pathology 28:393-394, 1997
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  53. Berman JJ, Moore GW. SNOMED-Encoded surgical pathology databases: a tool for epidemiologic investigation. Modern Pathology 9(9):944-950, 1996.
    PubMed Entry
    Full Text of Article
    This article was reviewed in an editorial in the following issue of Modern Pathology.
    Silverberg SG. SNOMED-Encoded surgical pathology databases: 's no big deal - or is it?. Modern Pathology 9:953-954, 1996

  54. Moore GW, Berman JJ, Hanzlick RL, Buchino JJ, Hutchins GM. A prototype international autopsy database: 1625 consecutive fetal and neonatal autopsy facesheets spanning twenty years. Archives Pathol Lab Med 120(8):782-785, 1996
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  55. Berman JJ, Moore GW, Hutchins GM. Maintaining patient confidentiality in the public domain internet autopsy database. Journal of the American Medical Informatics Association (JAMIA), Symposium Supplement, pp 328-332, 1996.
    PubMed Entry
    Full Text of Article in PDF format

  56. Sawyer R, Berman JJ, Borkowski A, Moore GW. Elevated prostate-specific antigen levels in black men and white men. Modern Pathology 9(11):1029-1032, 1996
    PubMed Entry
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  57. Berman JJ, Borkowski A, Rachocka H, Moore GW. The impact of unfunded research in pathology, surgery and medicine. Southern Medical Journal 88(3):295-299, 1995
    PubMed Entry
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  58. Berman JJ, Moore GW, Alonsozana ELC, Mamo GF. Elevated prostate specific antigen level and the negative prostate biopsy. Southern Medical Journal, 87(2):290-291, 1994
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  59. Berman JJ, Alonsazana, Brown L, Moore GW. PSA screening for prostate cancer: no reduction in Gleason scores. Modern Pathology 7(4):487-489, 1994
    PubMed Entry

  60. Moore GW, Berman JJ. Performance analysis of manual and Automated systemized nomenclature of medicine (SNOMED) coding. Am J Clin Pathol 101(3):253-256, 1994
    PubMed Entry

  61. Moore GW, Berman JJ. At last! Royalty-free Application Licenses for M developers. M Computing, 2:34-36, 1994
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  62. Moore GW, Berman JJ. Automatic SNOMED Coding. Journal of the American Medical Informatics Association (JAMIA), Symposium Supplement 1994 and the Proceedings of the 18th Annual Symposium for Computer Appllications in Medicine (SCAMC), pp 225-229, 1994
    Full Text in PDF format

  63. Berman JJ, Moore GW, Donnelly WH, Massey JK, Craig B. A SNOMED analysis of three years' accessioned cases of (40,124) of a surgical pathology department: implications for pathology-based demographic studies. Journal of the American Medical Informatics Association (JAMIA), Symposium Supplement 1994 and the Proceedings of the 18th Annual Symposium for Computer Applications in Medicine (SCAMC), pp 188-192, 1994
    PubMed Entry
    Full Text of Article

  64. Berman JJ, Moore GW. Image analysis software for the detection of preneoplastic lesions. Cancer Letters 77(2-3):103-109, 1994
    PubMed Entry
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  65. Berman JJ, Moore GW, O'Neill T, Liebelt A, Saffiotti U. Registry of Experimental Cancers of the National Cancer Institute: a database resource for cancer research. American Journal of Pathology 142(2):351-352, 1993
    PubMed Entry

  66. Seidman JD, Berman JJ. Premalignant non-epithelial lesions: a biological classification. Modern Pathology 6(5):544-554, 1993

  67. Seidman JD, Berman JJ, Yetter RA, Moore GW. Multiparameter DNA flow cytometry of keratoacanthoma. Anal Quant Cytol Histol 14(2):113-119, 1992
    PubMed Entry

  68. Berman JJ, Moore GW. The role of cell death in the growth of preneoplastic lesions: a Monte Carlo simulation model. Cell Proliferation 25(6):549-557, 1992
    PubMed Entry
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  69. Thomas RM, Berman JJ, Yetter, RA, Moore GW, Hutchins GM. Liver cell dysplasia: a DNA aneuploid lesion with distinct morphologic features. Human Pathology 23(5):496-503, 1992
    PubMed Entry

  70. Borkowski A, Berman JJ, Moore GW. Research by pathologists not funded by external grant agencies: a success story. Modern Pathology 5(5):577-579, 1992.
    PubMed Entry
    This article was abstracted in the Yearbook of Pathology and Clinical Pathology, eds. WA Gardner, Jr., BD Bennett, JB Cousar, AJ Garvin, GF Worsham, Mosby, St. Louis, p 5, 1994

  71. Sorace JM, Carnahan GE, Moore, GW, Berman JJ. Automated review of blood donor screening test patterns at a regional blood center. American Journal of Clinical Pathol 98(3):334-344, 1992
    PubMed Entry

  72. Berman JJ, Moore GW. Spontaneous regression of residual tumor burden: prediction by Monte Carlo Simulation. Anal Cellul Pathol 4(5):359-368, 1992
    PubMed Entry
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  73. Moore GW, Berman JJ. Cell growth simulations that predict polyclonal origins for `monoclonal' tumors. Cancer Letters 60(2): 113-119, 1991
    PubMed Entry

  74. Berman JJ, Murray R, Lopez-Plaza I. Widespread post-tracheostomy bronchial atypia simulating squamous cell carcinoma: a case report. Acta Cytologica, 35(6):713-716, 1991
    PubMed Entry

  75. Seidman JF, Berman JJ, Hitchcock CL, Becker RL, Mergner W, Moore GW, Virmani R, Yetter RA. DNA Analysis of cardiac myxomas: flow cytometry and image analysis. Human Pathol 22(5):494-500, 1991
    PubMed Entry

  76. Seidman JD, Berman JJ, Moore GW. Basal cell carcinoma: importance of histologic discontinuities in the evaluation of resection margins. Modern Pathology 4(3):325-330, 1991.
    PubMed Entry
    This article was abstracted in the Yearbook of Pathology and Clinical Pathology, eds. WA Gardner, Jr., BD Bennett, JB Cousar, AJ Garvin, GF Worsham, Mosby, St. Louis, pp 188-189, 1993

  77. Seidman JD, Berman JJ, Yost BA, Iseri OA. Basaloid-squamous carcinoma of the hypopharynx and larynx associated with second primary tumors. Cancer 68(7):1545-1549, 1991
    PubMed Entry

  78. Berman JJ. Seidman JD, Yetter RA, Moore GW. Clear cell dysplasia of bladder: Report of a case with flow cytometric analysis. Anal Quant Cytol Histol 13(6):391-394, 1991
    PubMed Entry

  79. Sorace JM, Berman JJ, Carnahan GE, Moore GW. Prelog: precedence logic inference software for blood donor deferral. Symposium on Computer Applications in Medical Care, 15:976-977, 1991
    PubMed Entry

  80. Moore GW, Berman JJ. Object-oriented English-to-Snomed translator using Transoft + Hyperpad. Symposium on Computer Applications in Medical Care 15:973-975, 1991
    PubMed Entry
    Text Document
    PDF Document

  81. Berman JJ. Solving Quality assurance problems with object scripting languages. Artificial Intelligence in Medicine 3:161-171, 1991
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  82. Sorace JM, Berman JJ, Brown LA, Moore GW. Blood donor deferrals by expert system. Symposium on Computer Applications in Medical Care 14:610-614, 1990

  83. Berman JJ, Moore GW. Cellmate: prototype hypercard stack for cytology and surgical pathology quality assurance. Symposium on Computer Applications in Medical Care 14:1005-1006, 1990
    PDF full-text

  84. Gadacz TR, Gabrielson EW, McFadden DW, Ullah A, Berman JJ. Adenocarcinoma of the ileostomy: the latent risk of cancer following colectomy for ulcerative colitis. Surgery 107(6):698-703, 1990
    PubMed Entry

  85. Berman JJ, Yost, B. Coccidioidomycosis versus pollen. Medical Journal 82(2):277, 1989
    PubMed Entry
    Manuscript
    Figures

  86. Berman JJ. Amsacrine-induced cytoplasmic rods in adult rat liver epithelial cells. Journal of Submicroscopic Cytology and Pathology 21(1):201-204, 1989
    PubMed Entry
    Figure 1 a,b,c

  87. Berman JJ, Ullah A. Colonic metaplasia of ileal stoma: biological significance for ulcerative colitis patients following total colectomy. American Journal of Surgical Pathology 13(11):955-960, 1989
    PubMed Entry

  88. Berman JJ, McNeill RM. Cytologic evaluation of Papanicolaou stained bone marrow aspirates. Diagnostic Cytopathology 5(4):383-387, 1989
    PubMed Entry

  89. Hoover L, Berman JJ. Repair atypia versus carcinoma in esophageal brush cytology. Diagnostic Cytopathology 4(3):217-223, 1988
    PubMed Entry

  90. Berman JJ, Iseri, OA. Acquired Gaucher cells located in dermis near a malignant hidradenoma. Ultrastructural Pathology 12(2):245-246, 1988
    PubMed Entry
    Document

  91. Ahsan N, Berman JJ. Papillary carcinoma of bile duct: diagnosis on bile drainage fluid. Acta Cytologica 32(4):471-474, 1988
    PubMed Entry

  92. Berman JJ. Cell proliferation and the aetiology of hepatocellular carcinoma. Hepatology 7(3):305-309, 1988
    PubMed Entry

  93. Berman JJ, McNeill RE. Cirrhosis with atypia: a pitfall in the diagnosis of liver aspirates. Acta Cytologica 32(1):11-14, 1988
    PubMed Entry

  94. Berman JJ. Ethidium bromide resistance in a rat liver epithelial cell line: association with enhanced drug efflux. Cell Biology and Toxicology 4(3):325-332, 1988
    PubMed Entry

  95. Berman JJ, Tong C, Williams GM. Toxicity of 6-thioguanine and 8-azaguanine to non-dividing liver cell cultures. Cell Biology and Toxicology 1(2):67-73, 1985
    PubMed Entry

  96. Perantoni A, Rice JM, Nardone R, Berman JJ, Curphey TJ. The function of gamma- glutamyltranspeptidase as a determinant in cell sensitivity of azaserine toxicity. Chemical and Biological Interactions 52(1):39-50, 1984
    PubMed Entry

  97. Ward JM, Kulwich BA, Reznick G, Berman JJ. Malignant fibrous histiocytoma, an unusual neoplasm of soft tissue origin in the rat different form the human counterpart. Archives of Pathology and Laboratory Medicine 105(6):313-316, 1983
    PubMed Entry

  98. Chen BP, Berman JJ, Ching W, Rice JM. DNA breakage by methylmethanesulfonate and its repair in brain and liver cells cultures from fetal rat and mouse. Chemical and Biological Interactions 44(1-2):63-77, 1983
    PubMed Entry

  99. Berman JJ, Rice JM, Reddick R. Endocardial schwannomas in rats: characterization by light and electron microscopy. Archives of Pathology and Laboratory Medicine 104(4):187-191, 1980
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  100. Berman JJ, Tong C, Williams, GM. Differences between rat liver epithelial and fibroblast cells in sensitivity to 8-azaguanine. In Vitro 16(8):661-668, 1980
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  101. Berman JJ, Tong C, Williams GM. 5'-Nucleotidase activities in cultured rat liver epithelial and fibroblast cells. Journal of Histochemistry and Cytochemistry 28(2):174-180, 1980
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  102. Foidart JM, Berman JJ, Paglia L, Rennard S, Abe S, Perantoni A, Martin GR. Synthesis of fibronectin, laminin and several collagens by a liver-derived epithelial line. Laboratory Investigation 42(5):525-532, 1980
    PubMed Entry

  103. Berman JJ, Foidart JM. Synthesis of collagen in rat liver epithelial cultures. Annals of the New York Academy of Sciences 349:153-164, 1980
    PubMed Entry

  104. Berman JJ, Rice JM. Odontogenic tumours produced in Fischer rats by a single intraportal injection of methylnitrosourea. Archives of Oral Biology 25(4):213-220, 1980
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  105. Berman JJ, Tong C, Williams GM. Differences between rat liver epithelial and fibroblast cells in metabolism of purines. Journal of Cellular Physiology 103(3):393-398, 1980
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  106. Berman JJ, Rice JM, Wenk ML, Roller PP. Intestinal tumors induced by a single intraperitoneal injection of methyl(acetoxymethyl) nitrosamine in three rat strains. Cancer Research 39(5):1462-1466, 1979
    PubMed Entry

  107. Edwards WD, Berman JJ, Rice JM, Townsend MW. Differentiation of a primary chemically induced rat nephroblastoma in organ culture. Development, Growth and Differentiation 21:519-525, 1979
    Publisher download

  108. Perantoni A, Berman JJ, Rice JM. L-azaserine toxicity in established cell lines: correlation with gamma-glutamyl transpeptidase acitivity. Experimental Cell Research 122(1):55-61, 1979
    PubMed Entry

  109. Perantoni A , Berman JJ. Properties of Wilms' tumor line (TuWi) and pig kidney line (LLC-PK1) typical of normal kidney tubular epithelium. In Vitro 15(6):446-454, 1979
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  110. Berman JJ, Perantoni A, Jackson H, Kingsbury E. Primary epithelial cell culture of adult rat kidney: enhancement of cell growth by ammonium acetate. Experimental Cell Research 121:47-51,1979
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  111. Berman JJ, Rice JM. Mesotheliomas and proliferative lesions of the testicular mesothelium produced in Fischer, Sprague-Dawley and Buffalo rats by methyl(acetoxymethyl)nitrosamine (DMN-Oac).
    Vet Pathol 16(5):574-582, 1979
    PubMed Entry

  112. Berman JJ, Rice JM, Wenk ML, Roller PP. Dependence of tumor spectrum on route of administration in Sprague-Dawley rasts resulting from single or multiple injections of methyl(acetoxymethyl)nitrosamine. Journal of the National Cancer Institute 63(1):93-100, 1979
    PubMed Entry

  113. Berman JJ, Rice JM, Strandberg J. Granular cell variants in a rat schwannoma, evidence of neurogenic origin of granular cell tumor (myoblastoma). Veterinary Pathology 15(6):725-731, 1978
    Full Manuscript

  114. Berman JJ, Tong C, Williams GM. Enhancement of mutagenesis during cell replication of cultured liver epithelial cells. Cancer Letters 4(5):277-283, 1978
    PubMed Entry

  115. Williams GM, Tong C, Berman JJ. Characterization of analog resistance and purine metabolism of adult rat-liver epithelial cell 8-azaguanine-resistant mutants. Mutat Res 49(1):103-115, 1978
    PubMed Entry

  116. Berman JJ, Stoner G, Dawe G, Rice J, Kingsbury E. Histochemical demonstration of collagen fibers in ascorbic acid-fed cell cultures. In Vitro 14: 675-685, 1978
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    DOCTORAL DISSERTATION

  117. Berman JJ. Purine analog resistance in liver cells culture, with specific applications to the fields of mutagenesis, carcinogenesis, cancer chemotherapy and cell culture. Temple University, Philadelphia, 1976


    BOOK CHAPTERS

  118. (book chapter) Hutchins GM, Berman JJ, Moore GW, Hanzlick RL, Collins K, and the Autopsy Committee of the College of American Pathologists. Autopsy Reporting. In: Collins KA, Hutchins GM. Autopsy Performance and Reporting, Second Edition, Library of Congress Number: 2003100553, College of American Pathologists, Northfield, IL, 2003, pp 265-274.

  119. (book chapter) Moore GW and Berman JJ. Anatomic Pathology Data Mining. In: Cios KJ, ed, Medical Data Mining and Knowledge Discovery. Springer-Verlag, Berlin/Heidelberg, 2000, pp 72-117

  120. (book chapter) Koropatnick, DJ, Berman JJ. Tissue genotoxic effects, Chapter 6. In: Douglas JF (ed.), Carcinogenesis and mutagenesis Testing, Humana Press, Clifton, NJ, pp. 79-86: 31-319, 1984

  121. (book chapter) Koropatnick, DJ, Berman JJ. Tissue genotoxic effects: methods, Chapter 23. In: Douglas JF (ed.), Carcinogenesis and mutagenesis Testing, Humana Press, Clifton, NJ, pp. 79-86: 31-319, 1984
    TEACHING PUBLICATIONS

  122. (teaching publication) Hoover L, Berman JJ. The diagnosis of epithelial repair in esophageal brush cytology. American society of Clinical Pathology Check-Sample (CII) 11:1-5, 1990

  123. (teaching publication)Berman JJ, Hoover L, Siegel E. Diagnosis of hepatic round cell lesions by aspiration cytology. American society of Clinical Pathology Check-Sample Number C89-10, 1989
    Abstracts

  124. (abstract) Leif R, Balis U, Berman JJ, Friedman B. The Development of a Laboratory Digital Imaging Project (LDIP) Data Exchange Specification. Dr. George L. Wied Memorial Symposium, Vienna, Austria, September 10-11, 2005

  125. (abstract) Leif R, Berman JJ, Balis U, Friedman B. The Laboratory Digital Imaging Project (LDIP) Data Exchange Specification American Society of Cytopathology Scientific Meeting, November 4-9, 2005 in San Diego, California.

  126. (abstract) Dhir R, Datta MW, Melamed J, Becich MJ, Bosland MC, Kajdacsy-Balla AA, Orenstein J, Silver S, Berman J. Changes in tumor and hgpin characteristics in radical prostatectomy specimens from 1990 to 2004: Results from the NCI Cooperative Prostate Cancer Tissue Resource. The United States and Canadian Academy of Pathology (USCAP), - Poster session III Tuesday morning, Poster number 96 - February 26 - March 4, 2005 Marriott Hotel San Antonio, Texas.

  127. (abstract) Berman JJ. A Comprehensive Meta Data Classification for Precancers. Archives of Pathology and Laboratory Medicine, 2003 127:789-813. Presented at the APIII Conference, Pittsburgh, PA, Oct 2-4, 2002.

  128. (abstract and perl script) Berman JJ. Zero-Check, A Zero-Knowledge HIPAA-compliant Protocol for Reconciling Patient Identities Across Institutions. Accepted for APIII, Pittsburgh, PA, Oct 7-10, 2003
    Abstract

  129. (abstract). Datta MW, Becich M, Bosland M, Dhir R, Kajdacsy-Balla A, Melamed J, Orenstein J, Silver S, Berman JJ. Ethnicity Based Analysis of Prostatectomy Specimens and PSA Outcomes: Results from the NCI Cooperative Prostate Cancer Tissue Resource. Presented at the March 22-28, 2003 U.S.-Canadian Academy of Pathology meeting (USCAP), Washington, D.C. Proceeding Abstract 665, page 146A.

  130. (abstract and perl script) Berman JJ. Extracting genetic conditions that predispose to cancer, using the Online Mendelian Inheritance in Man. Accepted for APIII, Pittsburgh, PA, Oct 7-10, 2003
    Abstract

  131. (abstract). Melamed J, Datta MW, Becich M, Bosland M, Dhir R, Kajdacsy-Balla A, Orenstein J, Silver S, Berman JJ. Prostate Cancer Pathologic Parameters and Clinical Outcome: Results from the Cooperative Prostate Cancer Tissue Resource Presented at the March 22-28, 2003 U.S.-Canadian Academy of Pathology meeting (USCAP), Washington, D.C. Proceedings Abstract 737, p 162A.

  132. (abstract and perl script) Berman JJ. Extracting cancer terms from publicly available nomenclatures. Accepted for APIII, Pittsburgh, PA, Oct 7-10, 2003
    Abstract

  133. (abstract) Berman JJ. Open Source Confidentiality Methods. Submitted January 2, 2002 to The Center for Open Source in Government. For the Conference on Open Source for National and local eGovernment Programs in the U.S. and EU, to be at George Washington University, Washington, D.C., March 17-19, 2003.
    Abstract

  134. (abstract and Perl script) Berman JJ. Predicting tumor marker outcomes with Monte Carlo simulations. Accepted for APIII, Pittsburgh, PA, Oct 7-10, 2003
    Abstract
    Document and Perl script
    PowerPoint

  135. (abstract) Berman JJ. Survey of Medical Abbreviations. Presented at APIII 2001, Advancing Pathology Informatics, Imaging and the Internet," October 4, 2001 Pittsburgh, PA.
    Archives of Pathology and Laboratory Medicine, 126:781-802(abstract section), July, 2002.

  136. (abstract) Berman JJ.A Perl script to produce an unencumbered subset of the Unified Medical Language System. Archives of Pathology and Laboratory Medicine, 2003 127:789-813. Presented at the APIII Conference, Pittsburgh, PA, Oct 2-4, 2002.

  137. (abstract) Berman JJ.Improved Medical Sentence Parser. Archives of Pathology and Laboratory Medicine, 2003 127:789-813. Presented at the APIII Conference, Pittsburgh, PA, Oct 2-4, 2002.

  138. (abstract) Berman JJ.A fast Perl script for finding DNA Palindromes. Archives of Pathology and Laboratory Medicine, 2003 127:789-813. Presented at the APIII Conference, Pittsburgh, PA, Oct 2-4, 2002.

  139. (abstract). Berman JJ. Medical Sentence Parsing in PERL. Presented at APIII 2001, Advancing Pathology Informatics, Imaging and the Internet," October 4, 2001, Pittsburgh, PA. Archives of Pathology and Laboratory Medicine, 126:781-802(abstract section), July, 2002

  140. (abstract)Moore GW, Brenner DS, Berman JJ. Automatic Indexing of a Pathology Image Archive using UMLS. Archives of Pathology and Laboratory Medicine 124:809, 2000.

  141. (abstract) Borkowski A, Berman JJ, Bennett WP, Jones RT, Harris CC, Kao GF, Trump BF. WAF-1 growth suppressor gene activity in keratoacanthoma and squamous cell carcinoma. U.S.-Canadian Academy of Pathology meeting, Washington, D.C., March, 1996

  142. (abstract). Sawyer R, Berman JJ. Frequency of head and neck basaloid- squamous cell carcinoma and its association with other malignancies. 4th International Conference on Head and Neck Cancer. Toronto, Canada, July 28-August 1, 1996

  143. (abstract). Moore GW, Berman JJ, Hanzlick RL, Buchino JJ, Hutchins GM. A prototype national autopsy databank: 1,625 consecutive fetal and neonatal autopsy facesheets spanning twenty years. Conference on Restructuring Autopsy Practice for Health Care Reform, May 25-26, 1995. Willard Inter-Continental Hotel, Washington, D.C.

  144. (abstract) Borkowski A, Raffeld M, Bennett WP, Jones RT, Harris CC, Berman JJ, Borkowski P, Ferreira LR, Kao GF, Trump BF. BCL-2 Oncoprotein expression and Ki-67 proliferation index in keratoacanthomas and squamous cell carcinomas. Lab Inv 72:46A(inclusive), 1995

  145. (abstract). Moore GW, Berman JJ, Moore GW, Brown LA. Software for Image Segmentation and Analysis in Pathology (ISAP) Am J Clin Pathol 102:538-539, 1994

  146. (abstract). Moore GW, Berman JJ, Sydnor, DL. Automated Edge Detection in Image Analysis: Distinguishing the Nucleus from the Cytoplasm Without a User's Threshold Estimate. Am J Clin Pathol 102:539, 1994

  147. (abstract). Berman JJ, Moore G.W., Alonsozana E.L.C., Brown L.A. Prostate specific antigen screening for prostate cancer: no drop in Gleason scores. Modern Pathology 7:162A (inclusive), 1994

  148. (abstract). Moore GW, Berman JJ, Sydnor DL. Fractal Dimension for Pathology Images, a Repeatable and Quantitative Measurement of Nuclear Rim Irregularity. Am J Clin Pathol 102:538, 1994

  149. (abstract) Berman JJ, Moore GW, Donnelly WH, Massey, JK, Craig B. SNOMED Analysis of 40,124 Surgical Pathology Cases. Am J Clin Pathol 102:539-540, 1994

  150. (abstract). Berman JJ, Borkowski A., Rachocka H., Moore G.W. Unfunded research by pathologists, internists and surgeons. Modern Pathology 7:69A (inclusive), 1994

  151. (abstract). Moore GW, Berman JJ, Moore GW, Brown LA, Richie SR, Kuzmak PM, Dayhoff RE. Pathology image analysis system in a networked image capture system. Computer Applications for Early Detection and Staging of Cancer, sponsored by the National Cancer Insititute and the American Joint Committee on Cancer, held July 28-30, 1993 at the National Library of Medicine, Lister Hill Auditorium, Bethesda, MD

  152. (abstract) Anderson V, Lubowsky J, Cobham A, Greco MA, Moore GW, Berman JJ. Multi-institutional pediatric AIDS autopsy database using natural language retrieval. Mod Pathol 5:143A, 1993

  153. (abstract). Berman JJ, Moore GW, Alonsozana ELC, Mamo GF. Elevated prostate specific antigen and the negative prostate biopsy. Modern Pathol 6:56A, Jan., 1993

  154. (abstract). Borkowski A, Berman JJ, Moore GW. Unfunded pathology research: its frequency and success in the scientific literature. Modern Pathol 5:100A, 1992 and Lab Invest 66:100A, 1992

  155. (abstract) Moore GW, Hutchins GM, Berman JJ. Object oriented programming system for autopsy retrieval. Modern Pathol 5:100A, 1992 and Lab Invest 66:100A, 1992

  156. (abstract) Berman JJ, Seidman JD, Yetter R, Moore GW. Clear cell dysplasia of the bladder: report of a case with flow cytometric analysis. Acta Cytologica 36:102, 1992

  157. (abstract). Moore GW, Hutchins GM, Berman JJ. Object-oriented retrieval system for the Johns Hopkins autopsy database. MedInfo 92, Lun KC, Degoulet P, Piemme TW, Rienhoff, eds. Elsevier, Amstedam, 1992, p 1613

  158. (abstract) Berman JJ, Moore GW, Saffiotti U, Liebelt AG, Kelly A. Computer analysis of the registry of experimental cancers of the National Cancer Institute. MedInfo 92, Lun KC, Degoulet P, Piemme TW, Rienhoff, eds. Elsevier, Amstedam, 1992, p 1598

  159. (abstract). Thomas RM, Berman JJ, Yetter RA, Moore GW, Hutchins GM. Liver cell dysplasia: a DNA aneuploid lesion with distinct morphologic features. Modern Pathology 4:96A, 1991

  160. (abstract) Sorace JM, Moore GW, Berman JJ, Carnahan GE. Analysis of a blood center's deferrals by expert system. Assoc Am. Blood Bank meeting, Baltimore, MD. Transfusion 31:(8 Suppl)74S, 1991

  161. (abstract) Seidman JD, Berman JJ, Moore GM, Yetter RA. Flow cytometric analysis of keratoacanthoma. Modern Pathology 4:30A, 1991
    Full Text of Article

  162. (abstract) Berman JJ, Moore GM. Why do most initiated cells fail to produce early (preneoplastic) lesions? Prediction by Monte Carlo simulation of growth. Laboratory Investigation 62: 9A, 1990

  163. (abstract) Moore GM, Berman JJ. Cell growth simulations predicting polyclonal origins for "monoclonal" tumors. Laboratory Investigation 62: 69A, 1990

  164. (abstract). Thomas RM, Berman JJ, Yetter RA, Moore GW, Hutchins GM. DNA Aneuploidy associated with dysplastic foci in cirrhotic livers. Hepatology 12:946, Oct. 1990

  165. (abstract) Berman JJ. CELLMATE v. 1.1. Computers in Biology and Medicine, Issue 3, pp II-III, 1990

  166. (abstract) Edwards WD, Perantoni A, Rice JM, Dove LF, Berman JJ. Differentiation of rat and mouse kidney rudiments in organ culture: Enhancement of growth and survival by insulin and hydrocortisone. Thirty-second annual meeting of the Tissue Culture Association, 1981, Washington, D.C. Abstracts. In Vitro 17:232-233, 1981
    PubMed entry

  167. (abstract). Perantoni A, Berman JJ. L-Azaserine toxicity in vitro is specifically inhibited by amino acid substrates for gamma-glutamyl transpeptidase (GGT). Proceedings of the American Association of Cancer Researchers. 21:83, 1980

  168. (abstract). Perantoni A, Berman JJ, Rice JM: Correlation of L-azaserine toxicity and gamma-glutamyl transpeptidase (GGT) activity in established cell lines. Proceedings of the American Association of Cancer Researchers 20:13, 1979

  169. (abstract). Foidart JM, Berman JJ, Paglia L, Rennard S. Synthesis of collagen, fibronectin, and laminin by ARL6 cells, an epithelial cell line from liver. Federation Proceedings 38:800, 1979

  170. (abstract). Berman JJ, Stoner GD, Perantoni A. Histochemical demonstration of collagen fibers in ascorbic acid supplemented cell cultures. In Vitro 14:346-347, 1978

  171. (abstract). Chen BP, Berman JJ, Rice JM. Organ differences in DNA repair in cultured fetal rat cells exposed to methyl methanesulfonate (MMS). Proceedings of the American Association of Cancer Researchers 19:122, 1978.

  172. (abstract). Berman JJ, Tong C, Williams GM. Differences between rat liver epithelial and fibroblast cells in sensitivity to 8-azaguanine and metabolism of purines. In Vitro 13:196, 1977

  173. (abstract). Berman JJ. 6-Thioguanine toxicity in liver primary cell cultures: lack of requirement for analog incorporation into DNA. Proceedings of the American Association of Cancer Researchers 18:66, 1977

  174. (abstract). Berman JJ, Williams GM. Enhanced susceptibility of cultured rat liver epithelial cells to mutagenesis during DNA synthesis. Proceedings of the American Association of Cancer Researchers 17:158, 1976

  175. (abstract). Berman JJ. Doublet method for very fast autocoding.
    Submitted, APIII (The Advancing Practice, Instruction and Innovation through Informatics), July 1, 2004.
    Accepted, APIII, September 13, 2004.
    Presentation, APIII, Oct. 8-9, Pittsburgh, PA

  176. (abstract). Berman JJ. Tumor Taxonomy for the Developmental Lineage Classification of Neoplasms. Submitted, APIII, July 2, 2004.
    Submitted, APIII (The Advancing Practice, Instruction and Innovation through Informatics), July 5, 2004.
    Accepted, APIII, September 13, 2004.
    Presentation, APIII, Oct. 8-9, Pittsburgh, PA


    Letters

  177. (letter)Berman JJ. Mapping with The Developmental Lineage Classification and Taxonomy of Neoplasms. re: BMC Bioinformatics 2007, 8:296, 2007.
    Full Text of Article published November 6, 2007.

  178. (letter)Berman JJ. Comparing de-identification methods.
    Full Text of Article

  179. (blog letter).Berman JJ.Use of Term Biomarker vs. Analyte. Lab Soft News, Jan 24, 2006.

  180. (letter) Berman JJ , Friedman BA. Reinventing Pathology: To the editor. Lab Medicine 37(3):2-3, March, 2006.

  181. (letter) Berman JJ. In Reply. Archives of Pathology and Laboratory Medicine. 128:954-956.
    Allen Press Online version

  182. (letter) Datta MW, Berman JJ, Dhir R. Prostate cancer with low PSA levels. N Engl J Med. 2004 Oct 21;351(17):1802-1803. PMID: 15499672
    PubMed Entry

  183. (letter). Sawyer R, Berman JJ, Moore GW. Prostate-specific antigen in black men. N Engl J Med 336(2):133-134, 1997
    PubMed Entry

  184. (abstract). Berman JJ, Moore GW. Dysplasia in Atypical Liver Nodules. Letter to the Editor. Human Pathology 27(2):211-213, 1996
    PubMed Entry

  185. (letter). Berman JJ, Alonsazana, Brown L, Moore GW. PSA screening and prostate cancer incidence. JAMA 275(115):1155-1156, 1996
    PubMed Entry

  186. (letter). Sawyer R, Berman JJ, Borkowski A, Moore GW. Prostate Specific Antigen in black men. Lancet 347(9011):1329(inclusive), 1996
    PubMed Entry

  187. (letter). Berman JJ, Borkowski A, Rachocka H, Moore GW. Letter to the Editor (invited). Southern Medical Journal 88:991-992, September, 1995

  188. (letter). Berman JJ, Moore GW. Histological grade of cancers detected via prostate-specific antigen screening. Lancet 343(8899):728-729, 1994
    PubMed Entry

  189. (letter). Moore GW, Berman JJ. Tyranny of M-vendor royalty: oppression of the M-programmer M Professional 11:24, 1994. This invited editorial has been picked up by two other journals for M programmers, including M-Boerse (published in its German translation) and M Technology.

  190. (letter). Berman JJ, Borkowski A, Moore GW. Correspondence re: T.J. Flotte. Research by Pathologists in the United States: analysis of publications. Mod Pathol 6:484, 1993. Modern Pathol 7(8):887-888, 1994
    PubMed Entry

  191. (letter) Berman JJ. Liver nodule criteria. Letter to the editor re:Ferrell LD, Crawford JM, Dhillon AP, Scheuer PJ, Nakanuma Y. Proposal for standardized criteria for the diagnosis of benign, borderline, and malignant hepatocellular lesions arising in chronic advanced liver disease. Am J Surg Pathol, 1993;17:1113-1123. Published in Am J Surg Pathol 18(9):960-962, 1994
    PubMed Entry

  192. (letter). Berman JJ, Borkowski A, Moore GW. (letter appearing under correspondence title Unfunded research? I am Shocked, Shocked!) JAMA 270(1):44-45, 1993
    PubMed Entry

  193. (letter). Berman JJ, Moore GW. Liver dysplasia and the interpretation of image and flow cytometric data of hepatocytes. (correspondence to DePrez C, Kiss R). Am J Clin Pathol 100(6):706-707, 1993
    PubMed Entry

  194. (letter). Berman JJ. Correspondence re: Nerlich AG, Majewski S, Hunzelmann N, Brenner RE, Wiebecke B, Muller PK, Krieg T, Remberger K. Distinctive case. Excessive collagen formation in fibrolamellar carcinoma of the liver: a morphological and biochemical study. Mod Pathol 5:580, 1992. Modern Pathology 6(4):505-506, 1993
    PubMed Entry

  195. (letter). Berman JJ, Seidman JD. Basaloid-Squamous Carcinoma. Histopathology 21(3):297, 1992
    PubMed Entry

  196. (letter). Berman JJ. Animal rights: are scientists on the correct side of the issue? VA Practitioner, 8:15-16, 1991

  197. (letter). Seidman JD, Berman JJ, Moore GW. Modern Pathology 4:773 (inclusive), 1991

  198. (letter). Berman JJ. Methyl nitrosourea induced rat odontomas Toxicol Pathol 16(2):309, 1988
    PubMed Entry
    Full Text PDF document

  199. (letter). Perantoni A, Berman JJ. In Vitro 15:7433-7434, 1979


    Book Reviews
  200. (book review) Berman JJ. Book Review: Cancer Informatics.
    Mayo Clinic Proceedings 77:1012, September 2002.


    Books

  201. Berman JJ. Biomedical Informatics
    Jones and Bartlett, Sudbury, MA
    © 2007
    ISBN 13: 9780763741358
    ISBN 10: 0763741353
    Supplemental information page

  202. Berman JJ. Perl Programming for Medicine and Biology
    Jones and Bartlett, Sudbury, MA
    © 2007
    ISBN 13: 9780763743338
    ISBN 10: 9780763743338
    Supplemental information page

  203. Berman JJ. Ruby Programming for Medicine and Biology
    Jones and Bartlett, Sudbury, MA
    © 2008
    ISBN 13: 9780763750909
    ISBN 10: 0763750905
    Supplemental information page

  204. Berman JJ. The Ruby Programming Language
    Jones and Bartlett, Sudbury, MA
    © 2009
    ISBN : 9780763757571
    Table of Contents
    Supplemental information page

  205. Berman JJ. The Perl Programming Language
    Jones and Bartlett, Sudbury, MA
    © 2009
    ISBN: 9780763757588
    Supplemental information page

  206. Berman JJ. Neoplasms: Principles of Development and Diversity
    Jones and Bartlett, Sudbury, MA
    © 2009
    ISBN: 9780763755706
    LC Classification: RC261 .B622 2008
    Dewey Class No.: 616.99/4 22
    Supplemental information page
    Veterinary Pathology book review
    Archives of Pathology and Laboratory Medicine book review
    JAMA book review (first 150 words free to non-subscribers)

  207. Berman JJ., with G.W. Moore Precancer: The Beginning and the End of Cancer
    Jones and Bartlett, Sudbury, MA
    © 2010
    ISBN: 9780763777845
    Publication date: 10/15/2009
    Supplemental information page
    Cancers Book review

  208. Berman JJ. Methods in Medical Informatics: Fundamentals of Healthcare Programming in Perl, Python, and Ruby
    CRC Press
    © 2010
    ISBN: 978-1-4398-4183-9
    Publication date: 09/15/2010

  209. Berman JJ. Taxonomic Guide to Infectious Diseases: Understanding the Biologic Classes of Pathogenic Organisms
    Elsevier
    © 2012
    ISBN-13: 9780124158955
    Publication date: 09/1/2012

  210. Berman JJ. Principles of Big Data: Preparing, Sharing, and Analyzing Complex Information
    Morgan Kaufmann Publishers, United States
    Publication date: 15th Oct 2013
    ISBN-10: 0124047246
    ISBN-13: 9780124047242

  211. Berman JJ. Armchair Science: No Experiments, Just Deduction
    Sold by: Amazon Digital Services, Inc. (Kindle book)
    Publication date: April 2, 2014
    ASIN: B00JGABSGK

  212. Berman JJ. Rare Diseases and Orphan Drugs: Keys to Understanding and Treating the Common Diseases
    Elsevier, Academic Press imprint
    Publication date: June, 2014
    ISBN-13: 9780124199880

  213. Berman JJ. Repurposing Legacy Data: Innovative Case Studies
    Elsevier, Morgan Kaufmann imprint
    Publication date: Mar 17, 2015
    ISBN-13: 9780128028827

  214. Berman JJ. Data Simplification:Taming Information with Open Source Tools
    Elsevier, Morgan Kaufmann imprint (in press)
    Publication date: April, 2016
    ISBN-13: 9780128038543



    Lightning Hypertext Publications (eBooks)

  215. (ebook) Berman JJ, Moore GW, Hutchins GM, Fowler D, Seidman J. The Lightning Hypertext of Disease CD (version 2.0). Pathology Informatics, Inc., Baltimore, MD, copyright 1996. See advertisement, May, 1996, Arch Pathol Lab Med

  216. (ebook) Berman JJ, Moore GW, Fowler D, Seidman J. The Lightning Hypertext of Disease Internet Image Version. Pathology Informatics, Inc., Baltimore, MD, copyright 1996. See advertisement, March, 1997, Human Pathol Lab Med

  217. (ebook) Berman JJ, Moore GW, Fowler D, Seidman J. The Lightning Hypertext of Disease Internet Version. Pathology Informatics, Inc., Baltimore, MD, copyright 1996. See advertisement, September, 1996, Arch Pathol Lab Med

  218. (ebook) Berman JJ, Moore GW, Fowler D, Seidman J. The Lightning Hypertext and Game of Pathology (version 2.0). Pathology Informatics, Inc., Baltimore, MD, copyright 1995. See advertisement in May, 1995, American J Surg Pathol, April , 1995, Am J Clin Pathol

  219. (ebook) Berman JJ, Moore GW, Fowler D, Seidman J. The Lightning Hypertext and Game of Pathology (version 3.0). Pathology Informatics, Inc., Baltimore, MD, copyright 1995. See advertisement, June, 1995, Am J Clin Pathol

  220. (ebook) Berman JJ, Moore GW, Fowler D, Seidman J. The Lightning Hypertext of Disease (CD and floppy disk, version 1.0). Pathology Informatics, Inc., Baltimore, MD, copyright 1995. See advertisement, September, 1995, Hum Pathol

  221. (ebook) Berman JJ, Moore GW, Fowler D, Seidman J. The Lightning Hypertext of Pathology (version 2.0). Pathology Informatics, Inc., Baltimore, MD, copyright 1994. See advertisement on back cover of June, 1994 issue of Human Pathology

  222. (ebook) Berman JJ, Moore GW, Fowler D, Seidman J. The Lightning Hypertext and Game of Pathology (version 1.0). Pathology Informatics, Inc., Baltimore, MD, copyright 1994, see advertisement in November, 1994, Human Pathology and December, 1994, Am J Clin Pathol

  223. (ebook) Berman JJ, Moore GW, Fowler D, Seidman J. The Lightning Hypertext of Pathology (version 1.0). Pathology Informatics, Inc., Baltimore, MD, copyright 1993. See advertisement in Modern Pathology, July-August, 1993, Human Pathology, September, 1993 and December, 1993. See also, Zaleski S, Cohen MB. Lightning Hypertext of Pathology, software review. Diagnostic Cytopathology 10:185-186, 1994

  224. (ebook) Berman JJ, Moore GW. The Lightning Hypertext of Cytology (version 3.0). Pathology Informatics, Inc., Baltimore, MD, copyright 1993. See advertisement in Acta Cytol, Vol 37, January-February, 1993. See also software review, by Baak JFA. The Lightning hypertext of cytology, Ned Tijdschr Geneeskd 137: 474, 1993

  225. (ebook) Berman JJ, Moore GW. The Lightning Hypertext of Cytology (version 2.0). Pathology Informatics, Inc., Baltimore, MD, copyright 1992. See advertisement in Acta Cytol, Vol 36, May-June, 1992.

  226. (ebook) Berman JJ, Moore GW. The Lightning Hypertext of Cytology (version 1.0). Pathology Informatics, Inc., Baltimore, MD, copyright 1991 (Registration TXu 499 151). See advertisement in Acta Cytol, Vol 35, Nov-Dec, 1991.

Last modified Jan 19, 2016

Books by Jules J. Berman, covers